PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2925s0026.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 204aa    MW: 22905.3 Da    PI: 4.7305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2925s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16105155255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Cagra.2925s0026.1.p 105 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 155
                          7********.**********954..34**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-31104164IPR001471AP2/ERF domain
PfamPF008472.6E-11105155IPR001471AP2/ERF domain
PROSITE profilePS5103224.487105163IPR001471AP2/ERF domain
SMARTSM003808.3E-36105169IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22105164IPR016177DNA-binding domain
CDDcd000183.95E-29105163No hitNo description
PRINTSPR003673.7E-13106117IPR001471AP2/ERF domain
PRINTSPR003673.7E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATIEESSDL EAMQKHLFED LLVSDGFMGD FDFDASFVSG LWCIEPQVPK QEPDSPVLDP  60
DSFVNEFLQV EAKSSPELNT SSSTYETDQC VKKAERFEEE VETRHYRGVR RRPWGKFAAE  120
IRDPAKKGSR IWLGTFESDV DAARAYDCAA FKLRGRKAVL NFPLDAGKYE APANSGRKRK  180
RSDAQEELQR THSNSSSSSC DAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28101164164ATERF1
3gcc_A1e-28101164164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545920.0AC254592.1 Capsella rubella clone CAP08-D18, complete sequence.
GenBankAY3507130.0AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288681.11e-141hypothetical protein CARUB_v10001989mg
SwissprotQ9LY051e-124EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ6V5F21e-141Q6V5F2_9BRAS; AP2 transcription factor
STRINGAT5G07580.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-124ERF family protein